Fifty years of amphipod meetings and counting!

Fifty years of amphipod meetings and counting!

Fifty years of amphipod meetings and counting!

Created by the Grabowski lab for ICA15 – Poland, 2013

DESIGN: Karolina Bącela-Spychalska; PHOTO CREDIT: Arthur Anker, Michał Grabowski, Hans Hillewaert, Anna Jażdżewska, Alexander Semenov

As summer slowly approached its end, Dijon, the beautiful French city surrounded by Burgundy wineries, was suddenly inundated by people dedicated to the study of amphipods – a group of fascinating crustaceans inhabiting all aquatic habitats.

More than 120 people from 27 countries came together at the end of August to share the latest developments in amphipod research relating to everything from taxonomy to ecology, from physiology to behaviour, from phylogeography to cryptic speciation.

What started as a meeting dedicated to one taxon (the groundwater genus Niphargus) has become the International Colloquium on Amphipoda (ICA), a meeting that envelops all amphipods from all habitats. It quickly grew into a friendly, informal environment where researchers and students exchange ideas and start new collaborations. A big family that reunites every two to three years in different countries in the Euro-Mediterranean region.

This year, ICA18 was a particularly special occasion as the group celebrated its 50th anniversary. As plenary speaker José Manuel Guerra-García from the University of Seville put it, “1969 had two major events: the moon landing and ICA1 in Verona, Italy.” His presentation, titled ‘Fifty years of amphipod meetings. Taxonomical, ecological, and behavioural patterns of the amphipodologist community’, detailed the history of this important community of researchers and its rapid growth and diversification during the last decades.

ICA18, organized by Thierry Rigaud and Rémi Wattier from the University of Burgundy, brought new energy, new graduate students, and early-career researchers looking to understand the incredible diversity of amphipods as well as new ideas for future collaborative projects.  

Participants to the 18th International Colloquium on Amphipoda, 26-30 August 2019, Dijon, France PHOTO CREDIT: Anna Jażdżewska

Meeting highlights

Nicolas Puillandre from the National Museum of Natural History in Paris gave a plenary talk titled, ‘DNA Barcoding, DNA taxonomy, and integrative taxonomy: separating the wheat from the chaff’. He highlighted the history of DNA barcoding and the growth of its applications, from its restricted sense of specimen identification to the wider applications as part of DNA taxonomy and integrative taxonomy. This was the first ICA meeting to have a plenary talk dedicated to DNA barcoding.

Another first for ICA was the hands-on mini-workshop on BOLD, the online platform that provides an integrated environment for the assembly and use of DNA barcode data, organized by Filipe Costa, iBOL Science Committee member for Portugal, and Pedro Vieira, both from the University of Minho in Portugal; Michał Grabowski, iBOL Science Committee member for Poland, and Tomasz Mamos, both from the University of Łódź in Poland; and myself from the University of Guelph in Canada. After three days of talks and poster presentations, the workshop participants gathered in the beautiful old library room of the Faculty of Sciences and spent an entire Friday afternoon learning about BOLD and how to include it in their workflow so that their data and metadata are stored on a single platform.

Participants to the BOLD mini-workshop organized on the margins of ICA18 in Dijon, France.

PHOTO CREDIT: Maria João Gomez

One of the hottest topics at ICA18 was cryptic speciation, as amphipods are a group known for high intra-specific diversity. The subject triggered an ad-hoc meeting to establish a roadmap for approaches to identifying and describing cryptic species. Due to the complexity of the topic, moderator Michał Grabowski proposed that a core group with representatives from natural history museums, academia, BOLD, and the World Register of Marine Species (WORMS) should continue the discussion online and produce guidelines for the amphipod community to address the topic of cryptic species in the near future.

Ad hoc meeting on cryptic species in amphipods. PHOTO CREDIT: Adriana Radulovici

The final session was dedicated to DNA barcoding and the progress made in freshwater, marine and groundwater amphipods. I had the pleasure of closing ICA18 with an overview of current practices in DNA barcoding amphipods inferred from compiling and analyzing all public amphipod barcode data available in BOLD.

Talks from the final session titled, ‘How many taxa?’

DNA barcode reference library for European freshwater malacostracans: getting there
T Mamos, T Rewicz, K Bacela-Spychalska, K Hupalo, A Jablonska, K Zganec, M Jelic, A Wysocka, L Sworobowicz, D Copilas-Ciocianu, A Petrusek, R Wattier, J Hinić, V Slavevska-Stamenković & M Grabowski

Broad-scale DNA barcode-based meta-species analyses of patterns of molecular variation in Amphipoda from world’s oceans
PE Vieira, C Gonçalves, P Soares, H Queiroga & FO Costa

DNA barcode availability for European groundwater macrocrustaceans
M Zagmajster, Š Borko, T Delić, C Douady, D Eme, C Fišer, F Malard, P Trontelj & A Weigand

What public data can tell us about current practices in DNA barcoding amphipods
AE Radulovici

ICA18 has set the course for a very interesting two years in amphipod research, one that will lead to ICA19 in Tunisia in 2021. I am happy to see more and more people producing DNA barcodes for amphipods which inherently leads to the discovery of new cryptic species (especially in groundwater). Compared to 2010 when I attended ICA14 in Spain, my first amphipod meeting, there is definitely more interest in DNA barcoding, with some research labs widely adopting the tool for their amphipod projects. My biggest hope coming out of ICA18 (and the BOLD mini-workshop) is that amphipodologists will come together to follow best practices when generating DNA barcoding data and metadata so that the entire community will have access to a reliable dataset of amphipod records.

As always, ICA was inspiring and energizing. And if ICA needed a slogan, the phrase coined by the Grabowski lab in 2013 could very well reflect the belief of people gathered in Dijon – Amphipoda is the way of life!

Conference Posters

I highlight some of the poster presentations of interest to the barcoding community. For more information including the authors’ affiliations and abstracts, please refer to the book of abstracts.

Coloring outside the lines: cryptic diversity in podocerid amphipods
BC Cummings & G Paulay

PHOTO CREDIT: Adriana Radulovici

Combining molecules and morphology to describe cryptic new species – the Bathyceradocus genus case
L Corbari, A Jażdżewska & A Ziemkiewicz

Combining artificial substrates, morphology and DNA metabarcoding for investigating marine amphipod communities in NW Iberia
BR Leite, PE Vieira, JS Troncoso & FO Costa

DNA sequencing and morphological analysis of an undescribed Salentinella species (Amphipoda, Salentinellidae) from an anchialine cave in Peloponnese, Greece
D Davolos, C Calcari, E De Matthaeis & C Di Russo

Estimating the actual biodiversity and evolutionary history of the amphipod genus Eusirus in the Southern Ocean
L Salabao, B Frédérich, G Lepoint, ML Verheye & I Schön

First insights into the deep-sea scavengers at hydrothermal vent fields along the Southeast Indian Ridge
K Kniesz, A Jażdżewska, TC Kihara & PM Arbizu

Historic Peracarid Crustacea collections in The Natural History Museum, London
A Herdman, LE Hughes & M Lowe

Syntopic coexistence of gammarid cryptic lineages: rule or exception?
A Petrusek, T Rutová, PK Bystřický, M Gajdošová, A Beermann, P Pařil, M Horsák, D Copilas-Ciocianu & F Leese

The deep-sea Eusiridae from Papua New Guinea waters (SW Pacific Ocean)
I Frutos, JC Sorbe & L Corbari

When one becomes 15: Morphological vs. molecular species delimitation in the “Niphargus aquilex” complex
D Weber, T Brad, A Weigand & J-F Flot

To keep up with the latest research in amphipods, check out the Amphipod Newsletter.

Written by

Adriana Radulovici

Adriana Radulovici

Centre for Biodiversity Genomics, University of Guelph, Canada

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Understanding the impacts of widespread forest die-offs across France, Germany, and China

Understanding the impacts of widespread forest die-offs across France, Germany, and China

Understanding the impacts of widespread forest die-offs across France, Germany, and China

Entomologists studying tree dieback of Picea abies in Bavarian National Park.

PHOTO CREDIT: Heiner M. Elsner

Forests throughout the world are suffering from an increase in the frequency and severity of droughts as well as pathogen and insect infestations. These climate-exacerbated factors are leading to tree diebacks—the progressive death of tree branches—and subsequent large-scale forest die-offs, the effects of which are not well understood. Preliminary results from our study indicate that while the number of insect species along forest die-off gradients might not be affected, their composition is changing.

CLIMTREE is an international project funded by the Belmont Forum that assesses the impact of climate-induced forest die-off on invertebrate biodiversity in highland forests in France, Germany, and China. This project aims to better understand how tree mortality and associated changes in forest composition affect biodiversity and ecosystem functions.

Silver fir (Abies alba) dieback in the French eastern Pyrenees

PHOTO CREDIT: Carlos Lopez-Vaamonde

Our study measures changes in the insect communities along dieback and salvage-logging gradients of silver fir (Abies alba) forests in the French eastern and central Pyrenees, Norway, spruce (Picea abies) forests in the Bavarian Forest National Park, Germany, and Yunnan pine (Pinus yunnanensis) forests in Yunnan province, China. We examined patterns of variation in the species diversity of flying insects collected by Malaise traps. As these passive traps can collect a large number of specimens, we analyzed samples in bulk using DNA metabarcoding. This approach uses DNA barcode reference libraries to identify species from a mixed sample using high-throughput technologies that effectively provide large amounts of DNA sequence data.

Members of CLIMTREE assessing the level of decline of silver fir stands in Pays de Sault (French eastern Pyrenees) PHOTO CREDIT: Carlos Lopez-Vaamonde

We also examined saproxylic beetles, a key functional group used as bioindicators in forest assessments of dead-wood availability. We collected these beetles using flight interception traps, and we also sampled specimens from natural history collections to build a DNA barcode reference library for the French saproxylic beetle fauna as a resource for future investigations.

The preliminary results from the 56 Malaise traps deployed in the French eastern and central Pyrenees have revealed more than 3,500 OTUs (Operational Taxonomic Units, a proxy for species) belonging to 18 insect orders, with considerable change in the compositions of the species detected along the dieback gradient as well as across a 4-month period. However, results to date do not suggest significant declines in species richness over the dieback gradient.

Rosalia alpina (Cerambycidae) is one of the 2,663 species of saproxylic beetles known to occur in France

PHOTO CREDIT: Carlos Lopez-Vaamonde

Polytrap flight interception trap

PHOTO CREDIT: Carl Moliard

Of the 55,571 saproxylic beetles collected by the flight interception traps, about 70% were morphologically identified to one of 284 species. Similar to the flying insects collected by Malaise traps, the diversity of beetles along dieback gradients did not decline. We are now trying to use a non-destructive metabarcoding approach that involves processing the collection media to determine whether we can uncover a comparable number of species with a morphology-based sorting approach. If results are similar, we will have a strong case for using this technique as a time-efficient alternative for biomonitoring moving forward.

Overall, there is an urgent need to obtain detailed baseline data on insect communities to quantify the impacts of climate change. By taking advantage of DNA metabarcoding approaches, our study is assessing biodiversity patterns at scales previously impossible and providing the data essential for evaluating future changes in insect communities. Our workflows are simple to use and provide an affordable, reliable, and repeatable method of assessing insect diversity in forests at a large geographical scale.

Written by

Lucas Sire

Lucas Sire

Institut de Recherche sur la Biologie de l’Insecte, Tours, France

Paul Schmidt Yañez

Paul Schmidt Yañez

Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany

Rodolphe Rougerie

Rodolphe Rougerie

Muséum National d’Histoire Naturelle, Paris, France

Christophe Bouget

Christophe Bouget

IRSTEA, Nogent-sur-Vernisson, France

Laurent Larrieu

Laurent Larrieu

Dynafor INRA & CRPF Occitanie, Toulouse, France

Douglas W. Yu

Douglas W. Yu

Kunming Institute of Zoology, Kunming, China

Michael T. Monaghan

Michael T. Monaghan

Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin, Germany

Institut Für Biologie, Freie Universität Berlin, Germany

Jörg Müller

Jörg Müller

Bavarian Forest National Park, Grafenau, Germany

Elisabeth A. Herniou

Elisabeth A. Herniou

Institut de Recherche sur la Biologie de l’Insecte, Tours, France

Carlos Lopez-Vaamonde

Carlos Lopez-Vaamonde

Institut de Recherche sur la Biologie de l’Insecte, Tours, France

INRA, Orléans, France

doi: 10.21083/ibol.v9i1.5726

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